discoveryexpress™
The service for discovery of biomarkers

Features of discoveryexpress™

  • Differential and quantitative protein profiling
  • High proteome and protein coverage
  • Easy transition to biomarker assay
  • Rapid turn-around time
  • Applicable to most biological sample types (human and animal biofluids, proximal fluids, tissues, cultured cells, formalin fixed parafilm embedded tissue, plants, etc)

View the discoveryexpress™ overview - PDF


Platforms used for discoveryexpress™

1. GeLC-MS

Features: Process:
  • High number of poteins detected
  • Provides information-rich proteome maps
  • Rapid transition to protein assay
  • Low sample requirements
  • Fast turn-around time
  • Low cost
  1. Run each sample on a lane of a 1D SDS-PAGE gel
  2. Segment each lane (10, 24, 40 segments depending on sample complexity)
  3. In-gel digestion of proteins
  4. Mass spectrometry (LC-MS/MS) for identification and quantification of proteins
  5. Data analysis - list of potential biomarkers

2. Differential mass spectrometry (dMS, label-free mass spectrometry)
Features: Process:
  • High throughput
  • Amenable to large number of samples
  • Focused on differentially expressed proteins
  • Fractionation provides higher number of proteins with a lower throughput
  1. Sample preparation, optional fractionation step, protein digestion
  2. Mass spectrometry (LC-MS/MS)
  3. Alignment of peptide chromatographic peaks
  4. Calculation of relative quantification
  5. Identification of differentially expressed proteins

3. iTRAQ
Features: Process:
  • Comparison across 4 to 8 samples simultaneously
  1. Sample preparation and protein digestion
  2. Label peptides with iTRAQ reagents
  3. Fractionation and mass spectrometry (LC-MS/MS
  4. Data analysis

4. SILAC (http://www.silac.org/)
Features: Process:
  • Pair wise comparison of samples
  • High number of proteins detected and quantified
  1. Cells grown in medium containing deuterium, 13C, 15N to label proteins
  2. Sample preparation and fractionation
  3. Protein digestion and mass spectrometry (LC-MS/MS)
  4. Data analysis

5. Phosphoprotein analysis
Features: Process:
  • Detection and quantification of phosphorylated proteins
  1. Sample preparation
  2. Enrichment of phosphoproteins or phosphopeptides with antibodies and/or capture reagents
  3. Mass spectrometry (LC-MS/MS)
  4. Data analysis

Latest News

NextGen Sciences strengthens protein biomarker team with two key appointments
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New! Biomarkers

NextGen Sciences now offers protein biomarker assay development and monitoring solutions
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Conferences

Join NextGen Sciences at the Biomarkers Europe 2008 the 10th - 11th November 2008, Vienna, Austria
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